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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921287.1_cds_XP_016470270.1_62739
CDS Infomation

[gene=LOC107792560] [db_xref=GeneID:107792560] [protein=coiled-coil domain-containing protein SCD2-like] [protein_id=XP_016470270.1] [location=join(848..1066,1252..1347,1617..2188,2668..2755,2952..2993,3129..3191,4622..4671,4758..4785,5107..5181,17246..17293,17383..17443,21563..21676,21774..21895,25697..25760,26195..26242,26867..26907,27980..28106,28351..28469)] [gbkey=CDS]
Sequence

ATGCAGGGTCAGGGGCACGCGCGGTCAGGGTCAAATGCGGGACGGCAGCCGCAGAATGCA
AAGGCGGCGGCGCAGAGGCTGGCTCAGGTAATGGCGTATCAACAAGCCGATGATGACGAA
GAGGAAGACGAGCTGTATGAATACAACCCTGTGGTTGTGGCTCCCTCTACAGCTGCTATT
GGCCTTGGTGGAAGGCCCAATCGAACTCGTACTCCTCTGTCAGTCCGGACATCCATCGAA
CCACAGGCATCGACTACCCGTCCGGCATCACTAGGAATCCGACCATCTGCATCTACTGAC
TCTTTGGGTCAAAAGCCAGTTCGTGCATCCATAGAAGCAAATGCATCATCTACACGTCCA
GCATCAATCCGTACATCCATAGAACAACATGCACTGACTACACATCCAACGTCAATATTA
GGAATCAGACCATCTTCGTCTTCAGAGTCTTTAGATCAGCAGCCTTTGTCAACTCGTTCA
ACGACACCTATTCGAACTTCTCTCCGATCAGGCTCCTCCTTGGAACATCAACAACAGCAA
CAGCAACAGCATGTACATGTTCATCAACATTCTCATTCATCTATCCAAACCACTTCTTCT
ACTTCTGCAGCTATCCCGAGTAAGCTAACTTTTCAATCTAAAAACACTTTGGAACAACCA
CTATCTGCTCGCGCACCAACTACACCTTTGGCTAGCAATCAATTATTGTCTCAATCCAGC
ATCCCGGAACAGCCTCTATCTGCTCGTGCTCTAGCAGCTAACCGCTTGGGTCACTTCGGT
GGCAAGCCAGTTCCTGTTGTACCTTCTAATGTGCATTTCTCGCTCAGACCAGTTGGTTCT
AATGCAGCTGCAATTGAGCCTCATCCTGAAGCTCGTAAAGATAAAAGGTCACTGAGCAGG
TTATCAGTAGATTTTGGCACTTTCAAGTATAAAGAACCTCCCACTCAGCCATCTTCATCT
GCTTTACAAGATGAGGTTGACATGCTTCAAGAAGAGAATGAAAGTTTACTCGAAAAGCTT
CGACTTGCAGAAGAGCGTTGTGAAGAAGCTGAGGCAAGGGCTAGGCAGCTTGAGCAGCAG
GTTGCCAGTCTTGGGGAAGGTGTGTCAATGGAGGCTCGTCTTTTAAGCAGGAAACAAGCA
GCTCTACAACAAAGGGAGGCTGCTCTAAAAGTTGCAGCACAAACTTACGGTGGAAAAAGT
GACGAGCTTGCAGCTCTTCGAACAGAAGCTGAGTCCCTGCGAACTATGACTCGAAGAATG
ATACTGAGTCAAGAAGAGATGGAAGAGGTTGTTCTCAAGAGGTGTTGGCTTGCACGCTAT
TGGAGTTTATGCGTCCGCTATGGTATTCACACAGACATAGCTGGAGCAAAACAAGAATAC
TGGTCATCCCTTGCCCCTTTACCGTTGGAAGTTGTGTTGGAGGCAGGGCAAAAAGCTAAA
GATGAGAACTCATTACTTTACAATGATCCAGAGGAAAGGGAAGCACTTCCGCATGATCTG
AGTGAACTTTCAGGAGACGGGAATGTTGAAAGTATGCTACTAGTGGATAAAGGTCTTCGG
GAACTGACATCACTAAAGGTAGAAGGAGCAGTAGCCCTAGCAATGGCCCAACAAAGGCGT
CTAACTGCACTCAAAGCTACAGATGACATGAGGCTACCAATGGAAGGCCAAAGCTTTTCA
GAAGCATTTGAATTGAGTCCGGAGGAGACAGAAGATGTGCAATTTAAGCAGGCGTGGCTC
ACATACTTGTGGAGAAGAACCAAAAATCATGGAGTGGAACCAGATATTGCAGAGGAGAGA
TTACAGTTTTGGATTAACCAAGGTGGTCAACCTCTCACTTCACATGATGCTGTTCATGTC
GAGCGTGGCCTCATAGAGCTCAAGAAATTGGGGATTGAAACCCAATTATGGAAAGAATCT
CGCCGATCGATAGATCCAGAAAACACCCAAAAAATGCAAAAGGAAAATGATTTTTGA

Peptide Sequence

PEP ID

XP_016470270.1
PEP Infomation

PREDICTED: coiled-coil domain-containing protein SCD2-like [Nicotiana tabacum]
Sequence

MQGQGHARSGSNAGRQPQNAKAAAQRLAQVMAYQQADDDEEEDELYEYNPVVVAPSTAAI
GLGGRPNRTRTPLSVRTSIEPQASTTRPASLGIRPSASTDSLGQKPVRASIEANASSTRP
ASIRTSIEQHALTTHPTSILGIRPSSSSESLDQQPLSTRSTTPIRTSLRSGSSLEHQQQQ
QQQHVHVHQHSHSSIQTTSSTSAAIPSKLTFQSKNTLEQPLSARAPTTPLASNQLLSQSS
IPEQPLSARALAANRLGHFGGKPVPVVPSNVHFSLRPVGSNAAAIEPHPEARKDKRSLSR
LSVDFGTFKYKEPPTQPSSSALQDEVDMLQEENESLLEKLRLAEERCEEAEARARQLEQQ
VASLGEGVSMEARLLSRKQAALQQREAALKVAAQTYGGKSDELAALRTEAESLRTMTRRM
ILSQEEMEEVVLKRCWLARYWSLCVRYGIHTDIAGAKQEYWSSLAPLPLEVVLEAGQKAK
DENSLLYNDPEEREALPHDLSELSGDGNVESMLLVDKGLRELTSLKVEGAVALAMAQQRR
LTALKATDDMRLPMEGQSFSEAFELSPEETEDVQFKQAWLTYLWRRTKNHGVEPDIAEER
LQFWINQGGQPLTSHDAVHVERGLIELKKLGIETQLWKESRRSIDPENTQKMQKENDF

Transcript Sequence

Gene sequence data has not been registered.